fastaq-capillary_to_pairs

FASTAQ-CAPILLARY_TO_PAIRS(1)     User Commands    FASTAQ-CAPILLARY_TO_PAIRS(1)



NAME
       fastaq_capillary_to_pairs - Converts file of capillary reads to paired
       and unpaired files

DESCRIPTION
       usage: fastaq_capillary_to_pairs <infile> <outfiles prefix>

       Given a file of capillary reads, makes an interleaved file of read
       pairs (where more than read from same ligation, takes the longest read)
       and a file of unpaired reads. Replaces the .p1k/.q1k part of read names
       to denote fwd/rev reads with /1 and /2

   positional arguments:
       infile Name of input fasta/q file

       outfiles prefix
              Prefix of output files

   optional arguments:
       -h, --help
              show this help message and exit



fastaq 3.17.0                      July 2018      FASTAQ-CAPILLARY_TO_PAIRS(1)