fastaq-chunker

FASTAQ-CHUNKER(1)                User Commands               FASTAQ-CHUNKER(1)



NAME
       fastaq_chunker - Splits sequences into equal sized chunks

DESCRIPTION
       usage: fastaq_chunker [options] <infile> <out> <chunk size> <tolerance>

       Splits a multi sequence file into separate files. Splits sequences into
       chunks of a fixed size. Aims for chunk_size chunks in each file, but
       allows a little extra, so chunk can be up to (chunk_size + tolerance),
       to prevent tiny chunks made from the ends of sequences

   positional arguments:
       infile Name of input file to be split

       out    Prefix of output file. If --onefile used, then name of single
              output file

       chunk_size
              Size of each chunk

       tolerance
              Tolerance allowed in chunk size

   optional arguments:
       -h, --help
              show this help message and exit

       --onefile
              Output all the sequences in one file

       --skip_all_Ns
              Do not output any sequence that consists of all Ns



fastaq 3.17.0                      July 2018                 FASTAQ-CHUNKER(1)