fastaq-get_seq_flanking_gaps

FASTAQ-GET_SEQ_FLANKING_GAPS(1)  User Commands FASTAQ-GET_SEQ_FLANKING_GAPS(1)



NAME
       fastaq_get_seq_flanking_gaps - Gets the sequences flanking gaps

DESCRIPTION
       usage: fastaq_get_seq_flanking_gaps [options] <infile> <outfile>

       Gets the sequences flanking gaps

   positional arguments:
       infile Name of input file

       outfile
              Name of output file

   optional arguments:
       -h, --help
              show this help message and exit

       --left INT
              Number of bases to get to left of gap [25]

       --right INT
              Number of bases to get to right of gap [25]



fastaq 3.17.0                      July 2018   FASTAQ-GET_SEQ_FLANKING_GAPS(1)