fastaq-to_fasta

FASTAQ-TO_FASTA(1)               User Commands              FASTAQ-TO_FASTA(1)



NAME
       fastaq_to_fasta - Converts a variety of input formats to nicely
       formatted FASTA format

DESCRIPTION
       usage: fastaq_to_fasta [options] <infile> <outfile>

       Converts a variety of input formats to nicely formatted FASTA format

   positional arguments:
       infile Name of input file. Can be any of FASTA, FASTQ, GFF3, EMBL, GBK,
              Phylip

       outfile
              Name of output file

   optional arguments:
       -h, --help
              show this help message and exit

       -l LINE_LENGTH, --line_length LINE_LENGTH
              Number of bases on each sequence line of output file.  Set to
              zero for no linebreaks in sequences [60]

       -s, --strip_after_whitespace
              Remove everything after first whitespace in every sequence name

       -u, --check_unique
              Die if any of the output sequence names are not unique



fastaq 3.17.0                      July 2018                FASTAQ-TO_FASTA(1)