fastaq-to_random_subset

FASTAQ-TO_RANDOM_SUBSET(1)       User Commands      FASTAQ-TO_RANDOM_SUBSET(1)



NAME
       fastaq_to_random_subset - Make a random sample of sequences (and
       optionally mates as well)

DESCRIPTION
       usage: fastaq_to_random_subset [options] <infile> <outfile> <percent>

       Takes a random subset of reads from a sequence file and optionally the
       corresponding read from a mates file. Output is interleaved if mates
       file given

   positional arguments:
       infile Name of input file

       outfile
              Name of output file

       FLOAT  Per cent probability of keeping any given read (pair) in [0,100]

   optional arguments:
       -h, --help
              show this help message and exit

       --mate_file MATE_FILE
              Name of mates file

       --seed INT
              Seed for random number generator. If not given, python's default
              is used



fastaq 3.17.0                      July 2018        FASTAQ-TO_RANDOM_SUBSET(1)