fastaq-trim_contigs

FASTAQ-TRIM_CONTIGS(1)           User Commands          FASTAQ-TRIM_CONTIGS(1)



NAME
       fastaq_trim_contigs - Trims a set number of bases off the end of every
       contig

DESCRIPTION
       usage: fastaq_trim_contigs [options] <infile> <outfile>

       Trims a set number of bases off the end of every contig, so gaps get
       bigger and contig ends are removed. Bases are replaced with Ns. Any
       sequence that ends up as all Ns is lost

   positional arguments:
       infile Name of input file

       outfile
              Name of output file

   optional arguments:
       -h, --help
              show this help message and exit

       --trim_number TRIM_NUMBER
              Number of bases to trim around each gap, and off ends of each
              sequence [100]



fastaq 3.17.0                      July 2018            FASTAQ-TRIM_CONTIGS(1)